NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334994_0079836

Scaffold Ga0334994_0079836


Overview

Basic Information
Taxon OID3300033993 Open in IMG/M
Scaffold IDGa0334994_0079836 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1963
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007170Metagenome / Metatranscriptome356N
F009888Metagenome / Metatranscriptome311N
F056616Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0334994_0079836_128_481F009888GAGGMALIFDLTEDPQQVVQVSAWVGDWHSYVVRLVDELGSPVDITTGTLGATFTNIQTGASYTFPSGSVTLTKQYSAQGILSVLNPAAYATAADIRLTISFTVSTTVRRFGPLQIQVLAP
Ga0334994_0079836_1380_1832F056616AGGAGMPFTKSFGLVGENCVVTIAFGGFQDGAPSAFTANTYTCLAKSVRTSTSVDTADVSALCDTTKKMQVTKASGSIDIELLVDGTQQTDGSPVFFNKEGYYCQVVITPGALNAKTFVGIVTATGIGIANGEAVTETATIMLGANGVATAWTSA
Ga0334994_0079836_891_1370F007170AGGMAYEPAVIEQWIYETLSGDATLLGLLAPDNKPDGYQMGIYNTVAPQTDPVSRKPVQVPYVVFSRAGASGDDEDTLCGARVFTTPNYRITVWDTESGAMSMARIQTIMNRIDTLLDNQTVTTTTPRLYVRRTSTDQTFALSDGGRTDFGVTAVYRCLTQQ
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