NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334994_0028412

Scaffold Ga0334994_0028412


Overview

Basic Information
Taxon OID3300033993 Open in IMG/M
Scaffold IDGa0334994_0028412 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3645
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004231Metagenome447Y
F014489Metagenome262N
F015570Metagenome253Y
F029673Metagenome187N

Sequences

Protein IDFamilyRBSSequence
Ga0334994_0028412_32_406F014489AGGAGMEMKQQHYAILKRLQHGASSLKRFTDKDGEVGNQGFHYLRYLNDLQNFGYALEIGDVWHITGFGVAKLAEQQPRVSKERVAAGTTTETYDGADLKQSGIREGAFDFLKYPSKFGDNLVYPKISV
Ga0334994_0028412_531_812F004231AGGAGMSVKPKDFKHHTYVFLEGIGECLVCFDILTPEDELDADHSDDYEIDFSVFDEQDKHITYDISKKQYNHCENKATDEMRDITTAWHKEWEQSFD
Ga0334994_0028412_820_996F029673N/AMIQHLRMAACSENTITGMANAWDLGSEHERDVVCSLLFNMIKDISLAQNIVDTIRVRE
Ga0334994_0028412_993_1292F015570AGGMNDKLDQAFDLLEFNDVTDQIRNMSYLAEQKKISTGVTDGSIQRALVRDLTENLRTLQTSNDPLLLRNDVLEEVAVELAKLPFGDTAASYAAFVRAMKS
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