NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334994_0003675

Scaffold Ga0334994_0003675


Overview

Basic Information
Taxon OID3300033993 Open in IMG/M
Scaffold IDGa0334994_0003675 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10999
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003964Metagenome459Y
F009743Metagenome / Metatranscriptome313N

Sequences

Protein IDFamilyRBSSequence
Ga0334994_0003675_4331_4843F003964AGGAVAEVSAKIEVVGLKDALKTLNKIDKSLRREITKDYKKIVQPVIDDANKLVPTGVPLSGMARNWQTRSGFQILPWIPGMKQKIAAKINTRAIKEYSGNKTNVGTFAIQWKGATGTMFDTSMSGSLGRALTARYGSSSRVMWKAYEQRQNDVMSEMEQLVKRVMDEANRETT
Ga0334994_0003675_4955_5254F009743AGGAGMKIKLQLKRTPDSAPEYYYTNLFVVTEWERLERRNIQQLSANPLYSDYACWMHTILKIKGEQVGDNWRDWLSKNPDIDILPVLDETDPNPTDAAPTAAN
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