NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0124692

Scaffold Ga0334992_0124692


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0124692 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1351
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049000Metagenome147Y
F051927Metagenome143N

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0124692_89_397F051927GGAGMRRCIECGSEVIDFDKTCTACRVSEWQDQQEQAQKLRERHYALEANRDAYLGRKRAVRDSIRAGVITAVAVMLFLALVSATRDAMRYEYQTKPAALKAQGVK
Ga0334992_0124692_998_1261F049000GGAGMGADDYLGVYIPSNLLDKVDYYSDGGHGYICGSIFAMRHEETADYIMANRDSELAKHFVEDGAVDLDNRAEVIKHINSINNWMGEEI

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