NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334992_0043974

Scaffold Ga0334992_0043974


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0043974 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2581
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005879Metagenome / Metatranscriptome387Y
F010836Metagenome / Metatranscriptome298Y
F011075Metagenome / Metatranscriptome295Y
F047046Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0043974_1376_1585F047046N/AMNQILELKSVIGKDVSENRSPTCRAKLIKVNKKTCTFEVVQSPYHIYPESRIGDRYLVPISWAWNAFFY
Ga0334992_0043974_2114_2305F005879N/AMFNEQVFWKDGFEGECTGGIFTRAVELKKFLELVEANESGNGGEVVGLRFSDNNLEIIIKPKK
Ga0334992_0043974_411_671F011075N/AMIDMNRSEFEVNLSIIVGSHLNDAMIEVSVNPQLAKKRLKFVKALTFFNEDLTKGVTDDYCDWLWNELFENQRWGGPYVKGSNYVI
Ga0334992_0043974_832_1365F010836N/AMSTSNFHNVNASAIFAVPLENDFDYEDLVDNLKSELNNDSDYVDYGKTDPNELRSFPSRTLGSIRRYHQYKDFYVEVCVTPVIRSGYYSGCNLDWNVNYLINGDASYDSPDFYIDDIAHYGNLSKSAATKYAKLAEKKAEKLKNEIVDELEALYNDYSDRYGVTAVFSNGETIYHKL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.