NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0011592

Scaffold Ga0334992_0011592


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0011592 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5800
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (17.65%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007751Metagenome / Metatranscriptome345Y
F010836Metagenome / Metatranscriptome298Y
F011392Metagenome / Metatranscriptome291Y

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0011592_4461_4673F007751N/AMNQIQELKSVIGKDVSQNQSPTCRARLVSVGKSNCIFESVPSPYDKFPKPEFVGVKYKIPNWIAWNSFFF
Ga0334992_0011592_447_1004F011392N/AMNLSIKELNELIYSLGITACKGIFVNKELNASLIDKLYSELNSKIAIQSDITDEVIDRVKSHYVSNEEADEDYRLSLLQDSNRYESSVSNDYDNHLKNLRERGFITQSILDYVDMKGAVTYTEMSNYYKSITGSNSFSHILANLRIPYKNRKTQRYVAKEGKRYSDALYVIKVANPSNWVIADCR
Ga0334992_0011592_4684_5217F010836N/AMATSNFHNENASAIFAVQLEHEFDYDDLVENLKSELNNDPDYVDYGKTDKNELRSFPSRTLGSIRKYVEYKDFYVEVCVTPVIRSGYYSGVNLDWNVDYLINGDASYDTPEFYIDDIAHYGNLPKSKATKYAKLAEKKAEKVKNRIVEKVESIFSDYSEKYGVTAVFSNGETIYHKL
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