NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334992_0008647

Scaffold Ga0334992_0008647


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0008647 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6931
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.79%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009684Metagenome314Y
F019105Metagenome231Y
F025467Metagenome201Y
F070887Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0008647_4561_5073F070887N/ALSFSQSRYPLQTVIDGDSVVILTKAQADTINAIFDSQKARIARFKSEVKSKDSIISIRDTVLMFYSQQVVQYRNVIDLQIVREDKLDTIRQWLQKRAEEGAWIYYSYINNEIVAVDLSDYVVRKDDYTGDIMFYKRTEDCPDENKEKEPPVGWHYDVVKPKRPKLNIFKL
Ga0334992_0008647_5030_5410F019105N/AMKKKLLIVGISFIALICFQIFSSGHGHVVVVEDNIQLTGENQKLTTANKKLTNSVNELKAENEELVEDKENLQQMVSEVIGDLDSTRSVVKDIKKELLNEKDITRKQSTGKQFEFQPITLPTSDGN
Ga0334992_0008647_6118_6612F025467N/AMMTKANITLLIQIALGVMCVMLIMREPKQVYPVSNQKTIERRIEGKETLIKEKGQVIDNSKLIIEELNHGLFDLQSQLDLVKNAKDTFNIVQIQDTMIHVLYKRDKEKDLIIKNQDTIIQAQRYIINSKDTIITAQAFDIKKLKRQRNISVILNTLLTTGLIIK
Ga0334992_0008647_6632_6931F009684N/ADLTAKGILVESTFQEQTSLVYGEGVAAVVEIGLIMIEPPVMDGMEVVTPPVYADGYHYDVMADNEYDFGANLVEPKNPKHAFAGHAITEEYVPLTEEGI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.