| Basic Information | |
|---|---|
| Taxon OID | 3300033992 Open in IMG/M |
| Scaffold ID | Ga0334992_0004740 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9827 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (12.50%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (12.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000957 | Metagenome / Metatranscriptome | 821 | Y |
| F001923 | Metagenome / Metatranscriptome | 617 | Y |
| F002038 | Metagenome / Metatranscriptome | 600 | Y |
| F002413 | Metagenome / Metatranscriptome | 561 | Y |
| F003583 | Metagenome / Metatranscriptome | 478 | Y |
| F003714 | Metagenome / Metatranscriptome | 472 | Y |
| F005588 | Metagenome / Metatranscriptome | 395 | Y |
| F019449 | Metagenome / Metatranscriptome | 229 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334992_0004740_2807_3379 | F002413 | N/A | MAAPTLVLISGFARAGKDTLASGLLEWSTRPAEHINFADALKEAGNHFMDYLGLDGNFMAEDFKCENRDALVAFGRFARRLDKDVFARHFANWCPVMKHHDQVSPETVVCSDWRYINELRVCQDILWEKGWKVRTVYVSTAGIGPANDEELDSIAEIRASHSFDQEYIFKPNARQQIMSEGRILAKSWRL |
| Ga0334992_0004740_5049_5288 | F002038 | AGCAGG | MSTTPAGIERIARTVKGQYALLLLLDGYPYVEMTARKHADYLSDLGLWKRKTHPSLARSQVRFFTLAPNGEIKELTFNR |
| Ga0334992_0004740_7258_7542 | F000957 | N/A | MTDFRHLDGMRNLILEIYEVNERIMTGDICSAKSAIASTNVKKILNHYHEALHEDGAVKVSLQAYVAAGGWVGIQYSYELDGFEVAGSQVPRRV |
| Ga0334992_0004740_7535_7822 | F005588 | N/A | MPDPLAHSTDMITTIRPNKMPTFWWLVPWAYARTLHMSANAMKAYADRLEDMLDLQSRTIAKQAADIKLLQARVRDQDDAIIKGTAITPDAYPHD |
| Ga0334992_0004740_7822_8082 | F003714 | N/A | MPNAQHPYTETLTFAGRVLTLKRPMAEYAARRLQAILPQIAALNAAGKSQADAAAALETTVTTLRHWLDITGTTWVNLKRRGPYSR |
| Ga0334992_0004740_8580_8909 | F003583 | N/A | MAKAKPLPKESGSANLLLAVTLLTVFAGVSALSSAYISGYVLDTLQSRDALVMIVTDAGIKSDSATVEQGLSAATLALKAVRDLGWALAVGCLGVGVAVFLRSRRQKAS |
| Ga0334992_0004740_8866_9240 | F001923 | N/A | MSPPPPIDPESFPKELKDGVIASILGGLAMTARLLLSQEPVSVGWVIRRVLAAAITAALVGYAITDHIESPGLRMGVVGAAGYAAPECLDYLMRYIKNKGDAEVGTAKKPNGKSKAPAKGKRKR |
| Ga0334992_0004740_9237_9410 | F019449 | N/A | MTISVETFTTVVVPGIASVAYASAGIACFFAHRPALAVMWLCYAIANICLLSTVLRK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |