NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0003668

Scaffold Ga0334992_0003668


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0003668 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11383
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (27.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019105Metagenome231Y
F030696Metagenome184Y
F070887Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0003668_10240_10620F019105GAGMKKKLLIVGSLFITLVVIQVFSSGHGHVVVVEDNIQLTGENKKLTTANKKLTTSVNKLEAEKEELIEDKENLEQMVSEVIGDLDSTKSVVKDIKNELKNEKDIVRRQSSGKQFEFQPITLPTSDDN
Ga0334992_0003668_8369_8710F030696GAGMKKGYRCDEVSDTIQITSVDSVPVIVHDSIVWEKFFVTKDTIIKYKTSYIPKTRWQTRIEYKLKRDTIRQIQKIEVAKHKSQKKGNGNIWLFIIGFAIGIVTHYLFKFSKFNL
Ga0334992_0003668_9771_10283F070887N/ALSFSQSRYPLQTIIDGDSVVILTKAQADTINEIFESQKVKIANFKSDVKTKDSIISVRDTVLMFYTSKYTEYRTIIETQIVREDKLDTIRGWLIDRAKENSWIYYSYLNNEVVAVDLSDYVVRKDDYTGDIIFYKRTEDCPNDDKQKEPPVGWHTDIVKPRRPKLNIFKL
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