NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334965_0000002

Scaffold Ga0334965_0000002


Overview

Basic Information
Taxon OID3300033991 Open in IMG/M
Scaffold IDGa0334965_0000002 Open in IMG/M
Source Dataset NameSediment microbial communities from Lake Vrana, Zadar, Croatia - 4 bact
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)596510
Total Scaffold Genes672 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)408 (60.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameCroatia: Zadar
CoordinatesLat. (o)43.9359Long. (o)15.5428Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003098Metagenome / Metatranscriptome507Y
F043481Metagenome / Metatranscriptome156Y
F104373Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0334965_0000002_129010_129234F003098N/AMARPLRFLFRFPPIHGVFDSGYGVIYIFGELHESEIENIIVHETMHYVLLRVIGRKASLRLDRIYTYFDDKTWY
Ga0334965_0000002_306705_306917F043481GAGGMSIDIKLERGAKGYNIIRKKCPNCGAEFVFKIHKNAVHDVGGDALYYPEENVVRCKVCMSTFKYESKPKG
Ga0334965_0000002_568516_568971F104373GAGMKSVSSDDIVVLDFDFFTEPEKQLFRKIWEIQNEYGLNPSADVLEANKELIFKALEVYSWRVTQLFISVMEGSLGNDEIEIWYFKLHFYNFFEDLAECLERVRRWSEKDREEFLNDMKQSGMMNKVFRIPSRINEHNTQKAKNKKKAKVND
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