| Basic Information | |
|---|---|
| Taxon OID | 3300033984 Open in IMG/M |
| Scaffold ID | Ga0334989_0000846 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14622 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (95.45%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F059963 | Metagenome | 133 | Y |
| F065430 | Metagenome | 127 | N |
| F067739 | Metagenome | 125 | N |
| F070107 | Metagenome | 123 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334989_0000846_4816_5394 | F065430 | GGAGG | MHPFKFLALVAFAYFSLVVVFGSSSDSPPETTIRIPQTVQIVPLTDEQIADQEALIAQMIAEENATIYDEPVETSTTLPQLAQIDPDTKCQEWLPLAVEMGWPNRTEVLQTLGRVMWKESRCQAISADSEWFNGHDYGLTQINQIHEEWLSEMGWTLDDMAVPSSNLRFAFLLWNAREEAGKCGWQPWSISC |
| Ga0334989_0000846_6392_6979 | F070107 | GGAG | MIRVQVTDRLIFEANELLEDMSGATFKKRADYKEEHSLIGAIGEIAVIDYCWNNDLLAYKHQGLKSDVHLHSGHTIEVKVQKVTTPPEMHYCVNFGVRKNPVEKSDFFFFVHLQYVAGRPEAVWLLGGCSWDKFFRMATLHHEGEPMMRHYADGNHVPNGRYYNTDCYDLPISQLAPPSAALKHFKSLQAKEEAI |
| Ga0334989_0000846_6976_7215 | F059963 | AGAAG | MNPDNVFTEWMQPIRPLRVLFQSGDSDNPNRHYIHIFALRTGGLECEYLSIDGIFIQARSRSVMFAETLIDGHWLRLGA |
| Ga0334989_0000846_7212_7433 | F067739 | GAGG | MIQYQVICMYRVGNPRKLTESQASELHTNPHIVMTLLNQDQHLDRYVKVIVDGTVAGYQTYRQGKRVTIEDIL |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |