NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0043678

Scaffold Ga0334982_0043678


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0043678 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2505
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006103Metagenome / Metatranscriptome381Y
F008614Metagenome / Metatranscriptome330Y
F051708Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0043678_1540_1701F051708N/AMLTHKDPEVQAMLGLLESQRDHAMGLVAAMAKENAELKARMLDAQKPETEQSL
Ga0334982_0043678_1746_1979F008614GGAMVAYRTRVRGYQCLSGGTAGDIEFRDGGSGGPILLEFNIPANTNNPFANIIPGEGILFSTSVHVTLPTNAKVTVFYG
Ga0334982_0043678_800_1540F006103AGGAMARTSFSGPVRAGYQGGTAAPQQPLTPTTINTGEVIEVNQGTGAYGFYARVEPTVGFGSSAFATPGEAYGMFGRTQSGAPFATVPSTNFNHMAGVVGNFAVIGTYSNNGLMAGVMGIINTNTLSGDAAVMAFMAGDSGVTTARAAFGVAMAQTTAGSGFEYGIDLKMQDPVADGGGTPSTIPYTKANIRMEDDVVVMVNTGVPVDGTTGDNFAGPGSMYIDSTAGNLYLQTGLITSPVWKLVTRAS
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