NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0030310

Scaffold Ga0334982_0030310


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0030310 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3090
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009402Metagenome318Y
F018368Metagenome / Metatranscriptome235N
F038093Metagenome / Metatranscriptome166N

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0030310_1191_1526F009402AGGAMKKLDEQFESAGFKYKQTHREDMFAIYERKYINSTKDSHYESIKIQSHNGMEIAGNKIPPSEYYPSSNSWGRHGYTCTTKKDAYTRLDKMMKEDVINKEAANKKAERKNAK
Ga0334982_0030310_2830_3090F018368N/AMTITTLTTRGQKISNQIVSADVIEINQGPFSFTALTESITTEEDKIVLKYEVDGEMCNHEITNDMLNNAHVEDGHIVFAWGTQLSIS
Ga0334982_0030310_834_1091F038093N/AMDKIKINFLILRYGAILHTIFVFPILYMADIYANTPMFWAFLLNHIMFGYFVLVKGCALGIEQTINIIAHQDAAKAIEEDTNKNN
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