| Basic Information | |
|---|---|
| Taxon OID | 3300033981 Open in IMG/M |
| Scaffold ID | Ga0334982_0009035 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5967 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (75.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F035302 | Metagenome | 172 | Y |
| F041650 | Metagenome | 159 | N |
| F065780 | Metagenome / Metatranscriptome | 127 | Y |
| F082668 | Metagenome | 113 | N |
| F091376 | Metagenome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334982_0009035_1630_1791 | F065780 | GAGG | MKKLLDYLIDNTWTLAGTGLVLITLSGTTFKQAMLLTGVAIVIHSVLTFNAKD |
| Ga0334982_0009035_3474_3746 | F091376 | AGGA | MKYAQWTICRPEGSTPEPLIRSRGGQASGGFMKDSETVVGYVWSDCDLTGLDKWNFSTMTNTQAMTIAKGLNPECFFCDDGTIQAPQVAV |
| Ga0334982_0009035_3743_4261 | F041650 | N/A | MREDIQLSFIECQMPRTPYQLERFVVGQHDTPEMQFVQVCRELEALYYTIKEVGMANKKTELEIAKLRATGDEIDSIDADIKELGLERTRLVAIGARRELDELIKMYDQMPHFTRQQIDESQPDYWQARLGRQANLQMMAGGAGWAHLEALDQIGVLQPMIQAQQEKAKELL |
| Ga0334982_0009035_607_864 | F082668 | N/A | MDSSAIVVAIIGAIGAIIVGFMQSFKKEAREANKTNSEDHAIVQSQLRMIFKTVNRVDDKLEKHINHHEEGTLNGQVTRSDKKLT |
| Ga0334982_0009035_864_1406 | F035302 | N/A | MVKRFPNKMIRAYTGNKDGLGTGERKGLTVFIKELCKRYPALWNNGSFVNRSMRGKQGSLSVHATGRAVDLSFRFMPNHKDSSNTKGIKDGGRKQAMEAMDFVVKHADAFGLECILDYFPIPHGRGWRCDRKAWTVYTKSEIHGAPMGDWLHFEISPKMADDAEAMRAAFNAIPLTAEVI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |