NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334982_0006908

Scaffold Ga0334982_0006908


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0006908 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6877
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (56.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000345Metagenome / Metatranscriptome1253Y
F072274Metagenome / Metatranscriptome121Y
F085130Metagenome / Metatranscriptome111Y
F099175Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0006908_298_438F099175AGGAGGMIQNMEQIIKKEHIEELENFANYLGVDFEDYIEYLHPDVDFDDYSR
Ga0334982_0006908_440_610F072274N/AMEESQIDGYISSDRMWAAVPWHKNKYISIYNGQQICVHHSLETAKKFIQKETRRKK
Ga0334982_0006908_4882_5247F000345GGAMSEKQPNEFGKAMQEWWDSDACKQLQKSHKEAKERAVGKYFMLSEEDKLDMVDAICTIMCKAEQEGTSHRGLQDKLGIYPAGFWIDNLMDVHNALWSYYHDKKQEKELEEDIKTLQDFTE
Ga0334982_0006908_867_1097F085130N/AMTSYYFWFGIFMFVGYLIATDDSVAYAVVLVSKIVKFQYEKTKWWILHNPANPIVKYLIWRRALRLAKELEKEFKK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.