NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0006310

Scaffold Ga0334982_0006310


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0006310 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7194
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030758Metagenome / Metatranscriptome184Y
F043932Metagenome / Metatranscriptome155Y
F068831Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0006310_4113_4487F043932AGGAMAKKFKSLLNLLTLAEDPIYGSSGDVYFNVTSKNIKIYNGSVWVDLTPASKDPAPFYMHTHSYDGNVHTVNLNETVYFDNLNQNSGVEETVPVIIGIDGGSPTSSYTNASYTQLTLLDGGQIGN
Ga0334982_0006310_4465_5028F068831N/AMEDKLATSYPTSKDNFTNPAATESMEGHATLHGNVNDAIEAIENKLGVNNSQDVNSIDYKVSQLQANLSTLDAENASELLGLDGNNDLTIDGIENKTIIDSFSKTVYKTVRYALQIDKSVGNLTHTSTIVLLNDGTNVYISESDIVSNTDLSLATVTFEENSGIISLCVTPVSGSIKVRYFRTALKA
Ga0334982_0006310_6896_7192F030758GGAMATVDKNFKVKNGLNVAGTATFGSNVVLGETPLRFDTATNKLQIQLNGTWVPIAFNSDIPDTASQISFMDIGLAIDYNGQPIYTVQANGVTPSATSKFV
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