NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334982_0002337

Scaffold Ga0334982_0002337


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0002337 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11776
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (37.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032199Metagenome / Metatranscriptome180Y
F059774Metagenome / Metatranscriptome133N
F085396Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0002337_10771_11070F085396AGTAGMEAKGLRKEPFLPLPAMVPPMTQTPFLTRSQRAIARMVKNAGYELTSYSQNDRLAARTKLLAVVSKAPDHAPASKPYKRTKAYFRTLADSMEDHIWRYL
Ga0334982_0002337_5788_6024F032199AGGAGMQNEKAMKNEYCESPKSCMAVAYRRETDEELIPAGLDAAYAEIVSSFHGEMEEFVRKYCPKRLVELDALMDQVFWQYH
Ga0334982_0002337_8678_8851F059774AGGAGMAFFTDGDYENDPELDWERPQRLNRQLSLQQLEGRLELWKQKHEDMCLKLYRAATGI

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.