NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0002052

Scaffold Ga0334982_0002052


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0002052 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12544
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (51.72%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008878Metagenome / Metatranscriptome326Y
F010762Metagenome299Y
F015082Metagenome / Metatranscriptome257Y
F022116Metagenome / Metatranscriptome216Y

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0002052_2088_2273F008878N/AMDRIADYIALAVAIHSVALIVVNLTPTPKDNAALSATAKVAVKIYRAIEILAGVITPFVK
Ga0334982_0002052_6268_6423F010762AGGAGMNETTLDIAFKEWWEASYGRPPGIHAVMTHVAFAAHILELLELMQDDQPQN
Ga0334982_0002052_6775_6990F022116GGAGGLLMTEPFLTTDELAARWGLKPAAIKNQRARGIGPAYVTAPRIGLPAGTPRVRYPLAQVLAFEEANGITPLN
Ga0334982_0002052_8855_9055F015082GAGMTEADIYWTFATAYQHGGGFFQALAHAGLKADPGNKRRLLDAFPEMVATYGTASRMHRQLRSGAAV
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