NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0001433

Scaffold Ga0334982_0001433


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0001433 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14966
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (70.97%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015731Metagenome / Metatranscriptome252Y
F020909Metagenome221Y
F021112Metagenome220Y
F047674Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0001433_1154_1807F021112GGAGLRREAEDFIEPGRSASGAVSAERSIGVNVNALDYAMAIETLAILHSWESMIRSARQLTPPAFLRKEPTIDQELQTACDFQLAHILWSLDQEWANDFFNEVKELHGKGMSAAKRFIEQPRRIPCPTDDCRKFVVIDVVAVADNGLSNEVSCYGCKQSWSVLRLVTLAMSNPTRRFFLDVEAIALWLGLTQRQVYKIVKANKIANKGQLYDLAAIISSR
Ga0334982_0001433_11986_12147F020909N/AMITKRGKRVRAVAILIGAILIWQIVANLWWVGNSPNADFLGWCWGSMTECEVL
Ga0334982_0001433_8216_8533F015731AGGGGGMSVEIETGIVDLDANTAAWLEQYKSALAKIKELNEVADVARAHIERALGDCELGMFLNRPVVRWTKVESKRFDTKRAREILPAQVIDALEVVSVSRRFSIVQEDD
Ga0334982_0001433_870_1055F047674N/AMDKDMDTETIKEIDEALAFAVSTRANTIDSKKHIVDKFIDDLLDSRLELAKCSALQSASV
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