NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0000596

Scaffold Ga0334982_0000596


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0000596 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22271
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (23.53%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008080Metagenome / Metatranscriptome339Y
F038674Metagenome / Metatranscriptome165Y
F048935Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0000596_205_792F048935N/AMENSETIMETKTKNLNAEFKKATKAQKRVMIAQDVLAQLKAKRYVAESGCWVQANYNSTATWADIKYTDSVQELFVEKKIESCNVCALGGLFMSCTNFNNNTLLEDLDDVSEDLGALVDEEEKLSNKLNKIFSTNQLKLIESYFEANGGFFREYDEDDRIEAFYNKNSSDKKRLQLIMENIVENEGTFVPAKLKI
Ga0334982_0000596_7361_7750F038674AGGAMSMDRKGFFKTLFGGFVAASTIPSLVKAEEAPQPPQFLSVNKEILRIDGHGNLGIGGSGNVGLGTSMPMNKLHVQGIIFHVNDRMLEMAGNEKGDFKIKWLDVKENESNTTITISKPNVDPWKTQTMMR
Ga0334982_0000596_7757_8335F008080GGAMLKIKIWMRGTNEYNRDTIDGPTPDQTQEQFEDAFRDGDECFCGGDVYETCPYFSADGYDSINVYLGGDEYIRNQEEPVFTTSDWSQFQFEKGGGCNYIPQEPDEVGKVNIWWYHDMKFNYIYYWENVTEFDPKKLTVQYGVDQDGQKYLEEVYYNGEAPDDYHDHGDTGYGYTGPEFVYHPEQKFAEEDKD
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