NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0000566

Scaffold Ga0334982_0000566


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0000566 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22895
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024291Metagenome / Metatranscriptome206Y
F047555Metagenome149Y
F091636Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0000566_11745_12230F047555GGAGGMSLQAQVQAKVQARSQFANGLTTEIADHPLTFFFDVGDCTKVWSDRRTFSAGLDEVDFSAIGIGTVKLLCLKNLSTTSQIALSAGWTGSQFSLFRQDVTAWNFSPIINLGALTLRGYPIREGGAFLLSCPNSAGFATTSGGSILRVGGTTGQNYEIYVMGT
Ga0334982_0000566_14292_14627F024291AGGAGGMAGVSAQGLTFSFGGSNLTVTSVQVNDTQDLIDGSHLGIAPNGRREYVGGFATDREVQIDYISTNILTAGVSGSMSISGPISFSGNATIASSSIGGSVGALVSGSATFRVA
Ga0334982_0000566_9665_10102F091636AGGAGMIHSQNHKVVANLESAAVGATATATLTIDTIGYDHASVTVLRASNASTVFANVVKVEESDDNSSYSNVTALVGGGVGGFSIPAVTSTALTSVLKLDIDTKAKKRYLKVSYTPGATANVAMVARLGRAEESPVSNSDAGVIGRFVG
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