NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334981_0043960

Scaffold Ga0334981_0043960


Overview

Basic Information
Taxon OID3300033980 Open in IMG/M
Scaffold IDGa0334981_0043960 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Aug2015-rr0007
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2350
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018366Metagenome235N
F028739Metagenome190N

Sequences

Protein IDFamilyRBSSequence
Ga0334981_0043960_745_1365F028739N/AMILQDLKDRHKGEPVWVCGSGPSMDWVTPQFFDDKVVVSINDVGFWFGIADFYSASNYSKANPITAKRINENPDCIFVTPDMDLEASDMTATHVGSGNHITFRPHAPFWRPDIGWPTDPDVLVIGGTSAHIAMHLACYMGASQINLVGVDNGSIGGISNFGKYGDSKAINPEGWSQWFPIVVNKLRELYGVRFFRLQPSLELLIVE
Ga0334981_0043960_83_748F018366AGGVVPSPVAIISPFDQKYWDRFGEAFIASIEGLTVKPQEVILVTTARVDVPSWWKVVPYWDDRIWPCVNVGVREATAEWCTHLPVDDTMDPNFFDGLVLQGDAVNVRGRWDGGLCYGTPEQYKNLMNLQNNGMPGLGVIRRKTWLKIPYRSHKYVDWIHWCEMRSHNVEVSFDSRCVWTWVRHDDALTAQSDHRAEQEVFEFCELLKSGRVVPGEDWPPKLAE
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