NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334981_0028334

Scaffold Ga0334981_0028334


Overview

Basic Information
Taxon OID3300033980 Open in IMG/M
Scaffold IDGa0334981_0028334 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Aug2015-rr0007
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3035
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005584Metagenome395Y
F008741Metagenome328Y
F009142Metagenome322Y

Sequences

Protein IDFamilyRBSSequence
Ga0334981_0028334_1023_1340F005584AGGAGGMAGTIDTSYFSTDLQFMIADMFQTVTGLASSAVSASVTDLATSSELDIGGEVFNITQSLVVLASAISAPTIGSLCTVSGVERMIGGFSQSTDGLSFTIELAEITT
Ga0334981_0028334_119_610F009142N/AMNQSVLINIEDAVAQLLAPISGLNVFTTNRIGKKLFPTAVVSASMSGQLLGNYTGVYEVSVSVDYCDTAAKISQEDFDAEYCSIFEAFYSETQPLFTKIQNNILDTKVYTARITSQTPTIKTAKRAWQRGLRISVICTPSELDDGLRFLDFSEQRNSMYVGVI
Ga0334981_0028334_1357_2028F008741GAGMSAKTIKYSQRLGDVLRCLPACKYLADQGHEVFFDCFPQYHGVFDLVSYVKAGSNGDVLDLEIWPNRYNDFIKSRKNWHDFVYSHPEIKDADKTNIVLDKLDEKPAEGLPETYHLVAPFGISQTFYRNPLELIQDAVKELGKDSAFVLCPPDIKIQGLNTYTAQSVEQMVKAIRGADQFWAVNSSPIIIASAVRREKESKFWGEKNESEAQNVFHFQGLVRMD
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