NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334981_0017265

Scaffold Ga0334981_0017265


Overview

Basic Information
Taxon OID3300033980 Open in IMG/M
Scaffold IDGa0334981_0017265 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Aug2015-rr0007
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4010
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009202Metagenome / Metatranscriptome321N
F009600Metagenome315Y
F010908Metagenome / Metatranscriptome297Y

Sequences

Protein IDFamilyRBSSequence
Ga0334981_0017265_2875_3186F009202N/AMYPSDDSHDLYIREKQLMLAGTAMWLAQQAADKAKGREVQDDILHHVMSCHYADLLLQQFIDYRQFTEGKMNEMYLANAKLRIDSEQMIYEIQRLQGIIEDTL
Ga0334981_0017265_3183_3413F010908GAGGMKQILSPFQKYECFAVDGVDYLVVDYTIIQDKDDNLVEWASEMKFKRLSDHKHYTMPITKIITNHKEGRAKHCKCK
Ga0334981_0017265_866_1246F009600N/AMRLPDTRQLTYKIVVGKVPSLNAFYASKHWTARVKAKELVSKEVMSQLEKYDLQEIKDVHIHCRVNYRYDIDNAIMAVKFALDTFKTWGGVKDDSRKYVHSLKLVHDTTISKDTAEITFTGLLVLE
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