NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334981_0014435

Scaffold Ga0334981_0014435


Overview

Basic Information
Taxon OID3300033980 Open in IMG/M
Scaffold IDGa0334981_0014435 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Aug2015-rr0007
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4430
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006138Metagenome / Metatranscriptome380Y
F012433Metagenome / Metatranscriptome280N
F029043Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0334981_0014435_1030_1290F012433AGCAGVEVSADQVADLRERLARIEERQTNIITILERHTSELAQWTAKINGKVDTLERESHTIKTKLWLVALVSGAVFSTIWELIKARVFPR
Ga0334981_0014435_1348_1695F006138GAGGMPATTVGQSGLVFGLTAETIGLVQSFSETRNIEKNEVRNASGDITGIGYYNPTTAYSLSVAITGASTSLTVGGAFSTLANASTVGTVRIDSLTINKSNSAFVTLDVSATGYPNVS
Ga0334981_0014435_866_1039F029043GGGGGMSKDDQACQALQYLLDEGFIALGYIDGKPSVHLTTSLADAQKAILKLVSNDSADWWK
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