NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334981_0002499

Scaffold Ga0334981_0002499


Overview

Basic Information
Taxon OID3300033980 Open in IMG/M
Scaffold IDGa0334981_0002499 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Aug2015-rr0007
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11940
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (52.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000345Metagenome / Metatranscriptome1253Y
F001881Metagenome / Metatranscriptome622Y
F036207Metagenome / Metatranscriptome170Y
F075870Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0334981_0002499_11521_11709F075870GGAMIKPIKEEFPHGDGFPIKITHKDGKELKDVKTCYFQTEDHAQKYIARNNFKKKDYTITYKNG
Ga0334981_0002499_11758_11931F001881N/AMNAVWDCRNNQGADTEEKLVSAILQVAAETVRFYTAQDNLIVLDKNDMLQLAQELDE
Ga0334981_0002499_5384_5539F036207N/AMINFISGTIFGIIVATIGFSPVAGALDGMMLNLQKTTVEMNAPKLPPPVSR
Ga0334981_0002499_8914_9336F000345GGAGMMTEPNTEENPLISPEELQKPNTLGESLKEWWDSDACKEMQKANEEAKQRAVGKYFMLSESDKLDMVQAICYIMCKAESEGTSHRGLQDALGIYPTGFWVDHLMEVHNALWSYYHDQKQEKELKDDLDALDEFIENKREC
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