NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0003759

Scaffold Ga0314861_0003759


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0003759 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14097
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005112Metagenome / Metatranscriptome411Y
F010071Metagenome / Metatranscriptome308Y
F039911Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0003759_2087_2275F039911AGGAGMKYTIAVLLAVVAAVAGYFGIRRLTHKDLGFTPVKRYATKLAKTLLHTEATAAQEAGAAPAA
Ga0314861_0003759_2455_2850F005112AGGAGMSLAAKYKLFWAACIVTLCGLAFWKNSKSYPRKSKLWRLGKSAIDTGLVLLLVLYAPALLLMYVVIWLTSPFKNKIMQSTAAFASILAVSHLAGIVFEAVAVFGVFAVDLLTGQVVARMDRRNRKEVAKAA
Ga0314861_0003759_2888_3655F010071GAGGMNRLANLALSVGETVFHEAGRLLFGVALGAAKQLLGTPQQLGTRQLVFPRALQTKTVDGTLLAGPRTQKEFAKFALKKGLPTEDRRRTLAVENPPHSVNDFDGVIEEGYGKGPKRLLYAGTGVIKVGECRCLGKINVHAHEAEKAGFHYDFVAEGVDPHTQSFEVNIPNGVLKGRYAFRQVFERGQYLVLRMKDNSALVEKPDIHLKPQEFLKTIGQSGRPVSVEWKDDGSLTLRLGHREFQRQGREPDALRRTP
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