NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0001245

Scaffold Ga0314861_0001245


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0001245 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34436
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (56.76%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014825Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0001245_19251_19433F014825AGGAGGMAGNILTIKLTDDQQKQIKSATGRSISELNIDLASTGALSDKELADVAAGAVRIYIKQEG
Ga0314861_0001245_19814_19987F014825AGGAGGMAGNKLTIKLTDDQQKQIKNATGKSITELSIDLASAAHLTEKDLENVAGGVQKVREG
Ga0314861_0001245_20940_21122F014825AGGAGGMAGNILTIKLTDDQQKQIKNATGKSITELNIDLASTGQLSEKDLGGVSGGISWGPIKAEE
Ga0314861_0001245_22024_22194F014825AGGAGGMGGDKLTIKLTDDQQKQIRAATGKGITELNIDLAAGRLSDEELDQVAGGAKKKGGP
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