NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0001122

Scaffold Ga0314861_0001122


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0001122 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37058
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (59.38%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001969Metagenome / Metatranscriptome609Y
F010527Metagenome302Y
F023022Metagenome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0001122_13339_13602F001969GAGMNMQNETNTKAEVIALLEGRCQASLENIRQFILDLDERDYVEFLYPSDPDFAEELEARNAEAKGMLETLRDIEGTLRDLDRGRIKIQ
Ga0314861_0001122_18971_19204F010527AGGMSRNANRKEVTKRAVLAELESLRQGHHARYRTLVGRFARCRQLQTTAALFAAAVDASARTYSRTPLVAPPGWLPPVS
Ga0314861_0001122_27898_28386F023022GGAGGMRIILKVSSSNEYCDGGCELALVDLTPELAALALQRIAMLREQKSLDPDIDETYYWAYFAEYFSTWVNLAAAENEVDSASLTFADMLDGLRIADNEVFTVPESFQLPPSQIAAVECQEMIAREDSVAFTAIPRHASFRVQTVEIPLAVLEAAATPTPSSARL
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