NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0000642

Scaffold Ga0314861_0000642


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0000642 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52746
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (68.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010144Metagenome / Metatranscriptome307Y
F050841Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0000642_22722_23042F010144AGGMVTYFSMVLGHLFNWLAFAAVALYAGIVLMRYRTDGPHYRLRFELQDPARSLEYLAVWLGVKVLEGCLRLTRVIFNVLLEASAQVGEWFIRLSPTVQESVRSRFLV
Ga0314861_0000642_47908_49182F050841N/AMSSAKPGTYTTAYITLTEPQVYMFDPTILPPNPPINIPSFTMSPLKLIEVPVNPSLVINKGAASVMQVDFDMLHMIQSITTNPTTLKLTVTATPEISITPITSVGSQGQGFGELDDLVGFVRSVTIPPPGNLSLYDGSFTLQLLSASITSPPLATINLNSSSQLYGFSELNQLDTDSFMEVDAYIDVDGNFVATYVEDEYRESVPPVGITAPPTLAIIGPVMSLTRDTHGNVTTFNLWARDVEPNDAFVVEPDTMVTVNLSSSTTYQYSARSTNFANLPFGPGNFTVGQEVIVHGLVIVPKATSGSGAPSLPTTVTAFKVYDKLQSIQGSFSALLTVAGDDKTGAFTFSPCAVMFQGTPVIVLTTNQTNFVNLSGLSSLSTQSGLPTLLVKGLPFFEQQAQTIYGVPVPAGTLVILAKQVHQLQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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