Scaffold Ga0314861

Basic Information
Taxon OID	3300033977 Open in IMG/M
Scaffold ID	Ga0314861_0000124 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033977 Open in IMG/M

Scaffold ID

Ga0314861_0000124 Open in IMG/M

Source Dataset Name

Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	129942
Total Scaffold Genes	129 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	94 (72.87%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

129942

Total Scaffold Genes

129 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

94 (72.87%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Peru: Loreto
Coordinates	Lat. (^o)	-4.0712	Long. (^o)	-73.2029	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Peru: Loreto

Coordinates

Lat. (^o)

-4.0712

Long. (^o)

-73.2029

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F005112	Metagenome / Metatranscriptome	411	Y
F016632	Metagenome / Metatranscriptome	245	Y
F027079	Metagenome / Metatranscriptome	195	Y
F028392	Metagenome	191	Y
F039911	Metagenome / Metatranscriptome	162	Y
F057060	Metagenome	136	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000124_27211_27606	F005112	AGGAG	MSLAAKYKLFWAVCIATLCGVAFWKNSKSYPGKSKLWRLGKSAIDTGLVLLLLLYAPALLLVYVVIWLTSPFKNKIMQSTAAFASILAVSHLAGIVFEAVAVLGVFAVDLLTGQVVARMERRNRKELAKAA
Ga0314861_0000124_27655_27855	F039911	AGGAG	MKYTIAAVFAIVAAVFAALVAYFDLRYLTGKDLGFTPVKRYATKLAKALLHTEATAAQEAGVAKAA
Ga0314861_0000124_28487_28825	F002761	AGG	MTFTPSATSSFTAGALFWSMVWAGLGKLDQIVRFLGFKNRRPRRMVVRWINSHKVIALTLTEAVNYGVHGITNPLGVTFALGGTIVNVFMILFIVPIWSGLSALINGKEAQQ
Ga0314861_0000124_29140_29334	F027079	AGGAGG	VIKAFLNLCLILFLNTLAFMVAIVAAAAVAWAAICGARWIFAGFQNALMALRARRAERDVRPPG
Ga0314861_0000124_29331_29663	F016632	AGGAGG	LTGILELFVLVETGSAIGLLAGWRNKVLTAKVNFFRPPDNRPSPFDKVLRGKVGRALTRRDRLRLKIADRLVNLIRKLVQYEAFRQLVRGLALAHSPMRQALRKKGGRPW
Ga0314861_0000124_29675_30133	F003859	AGGAG	MTELKTQLGPRSGCKSIADYFLPVASLCKSFKLGWQWRRLRWDVAAASEAAQGHEANGVRPGSQQFETLYDEVAKKVQEFSHESGAPIDTLKAKLPALCAIERLAHPDPVAPHTKLGLTLGIIIAAVLGSLGIGALIGLATGMAHWIAHLFA
Ga0314861_0000124_31774_32163	F028392	AGGAGG	MAKSIAVVHLPEALRDGNSALVKLAGKVDSFSLVLQRTPECQLKRQIEKEYHAMVFTTRKEVRRYCPKYRYFVGEGILDFSTDCASGQLEPGDLGKPPQPKRGKLCQECCFFLGEPEEQLPGMVASEIQ
Ga0314861_0000124_32356_35472	F057060	AGGAGG	MANHGELYFTPDIAKPHQKWSVLEDPERPGRRLIYRHYRQPGEKPDVRTSFGHSELSSVLEHYAAKAGIEYSRLSLGRQTDSFGLALDLVQSGLGLEVPGDGVWFPVVPWVRDEGFCAVLMREPIPFEEACHLFGFEIPAAKPSVPKRIKRHLARGRTTLFGREAEVRQLNEYDHVHRVILADGVTSFETAVYDPGPRWPEAWTSGAALASRRGGALLTGHPVQIGDLIQITGALPTGQIKAHCLIWDVAYDLIVFDIKQELRAWNGQAYFSVLNELHSSPANLDVQTASNLDLAKVRDQKLIQYLGQEFACDVFELMKDDERVKEEIGFYNPNGWVDEEGNLVMNENRWKLWRMYAAGLPAMRFRHCRDAFYRTQMESPQNSDPDRFRIHFREPKDLMTVQPQELAGAAVRKYLFPEPFVFDRQGYPHWERSTLPDVNSVYLGGFEGEFISLRNPNASHKESGKLRGHRLQQFADIDRGAVMFVHLGFAASPEGTPGLGKSFNGADFDDSVLALLDPEIVAHWKTLQDYPQVVAAPTQVMVIDDGDALFDRHPDIERYDDEFVMRMIIDARDGQMGIGCVVNAIVWFNLLWLNRESILAQLRAMIPSPKVLEAIRWIEHDLPQSQMPMIASRLEEIIDSIKMNGKSVEWANGAITEFRNTCPVAPKFWWQGGFQGQGRIPRHRLGNGNEPIAVTTAMDVAREEWVEIFKKARKFADKESWKRCWRVPLEIRTFPTRPEAATAARDFWLLYNRTREAKKAEFLKAGKDHRGKSLTTEQEASLAAYLFAEEDVHHRIKASGMYLEIYAELVKLVFDRELTLEPPRNPDGSVKPVADGILGGPHTLDGFLDMAKAAGVTRRYVPITWESDQARADYGHLNLDVVVEDTLVRMVGSTPNPANWLGIVDVPDGQYRLEHGLVAAEDDSDSPPQATTVALPAVNGFEQRLKDITLKQHDRQKIEAELKLFQAQIGQRVTVKPVTYHNPKTRKDEPAAQVFLEGKSEPLCWISREHLSAVTRELTGILVSNGKYTLKAVCTLPD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0314861_0000124

Overview

Ecosystem & Geography

Associated Families

Sequences