| Basic Information | |
|---|---|
| Taxon OID | 3300033977 Open in IMG/M |
| Scaffold ID | Ga0314861_0000018 Open in IMG/M |
| Source Dataset Name | Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 257167 |
| Total Scaffold Genes | 226 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 136 (60.18%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Peru: Loreto | |||||||
| Coordinates | Lat. (o) | -4.0712 | Long. (o) | -73.2029 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000279 | Metagenome / Metatranscriptome | 1383 | Y |
| F000602 | Metagenome / Metatranscriptome | 995 | Y |
| F000867 | Metagenome / Metatranscriptome | 854 | Y |
| F005007 | Metagenome / Metatranscriptome | 415 | Y |
| F019184 | Metagenome / Metatranscriptome | 231 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0314861_0000018_163405_163611 | F019184 | AGGAG | MATKYRVVKVKGVKPETFIVVGIDFAASAITSTSEAMSEAAMRSYLQKAGASANEINTWLEQARKYPG |
| Ga0314861_0000018_169661_170002 | F000602 | GAG | MALPAVALVSNFTRTTRAAMAAYVVARTPVLFGVAAALLYRGSRQDVYNILWAVVFGFATLNILSLAARRFEPGRRGLSFGELMAVLVVLVSLFLLGWEMLTLFHIFPIKLKR |
| Ga0314861_0000018_205506_206054 | F000279 | GGAG | MTQNNDNGMMEEIVLPEHLLPLESVLGQGVSALDLCMVLARIFRVQYSEVALLRLDKGLLHFIFPEHLRTTGAIPLSSKAVAAHTALSKKAEIFNNFARVKHASIFETIKPGTTDSEEAPPAPIQKLMSVPIIDRATNVVGVIQISRKGLDPKYAADFSREDLHDLEVAAGLLATAPAVLQN |
| Ga0314861_0000018_66934_67530 | F000867 | N/A | MRKKSILCLAGLLFLLSCSPRDFLTRRLAADLIADSDAFKRPQQFVLQTGVVSNKDYVSPEYLVLQHHGWITATTATCPPGLVPPPCWDILLTPLGVDTVRALVPAQEADKASFAIPVARRELLGVTGISKEGNAADVDFTWRWIPLNEIGAALYSSDLHYKSTVTFRNYDDGWRIVESSPRSTQTLDDALKNAEPVL |
| Ga0314861_0000018_81977_82186 | F005007 | GGAGG | MTIPVRGTAALATAAVIVAATLIWLPAYRWFFAISVGFGLVVAGALYLWHKLRPVREEDIEKKRPLGLS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |