NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334792_002635

Scaffold Ga0334792_002635


Overview

Basic Information
Taxon OID3300033888 Open in IMG/M
Scaffold IDGa0334792_002635 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9361
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004440Metagenome / Metatranscriptome438Y
F021032Metagenome / Metatranscriptome220N

Sequences

Protein IDFamilyRBSSequence
Ga0334792_002635_4393_5193F004440AGGAGMPIIDTVRNLLTHNKIPSLDNLQMSDLLHYLFTTCEKAERIQVAEAVYRHDYGNPSALDVFLACTLPLAEKAARRRAHKVFIYPSDWQLELMYDGAVAAAIAVFQCNFAVETGTNAFRRYLLRALALGAVRSYFKREENDGIRAVADLTALPIHIKAHNDPAEQDIIARDLLDQVTGFPNLRPDVCATLLCIRALGPDEALKEHAFTASGDSDKWKRERGRRPILNPNAIAQAMGTDRSTVHRNLREARIILRSAFNADGKLFLSH
Ga0334792_002635_5282_5563F021032AGGAGMNREFEQYRFARIEGRNVTRARLQTQFKDGFNDLDELEKAIVLELTMETPCAPWRKSEIEQIGCREGMRLAIHEFFGELRQQIAGADRHRSAG
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