| Basic Information | |
|---|---|
| Taxon OID | 3300033823 Open in IMG/M |
| Scaffold ID | Ga0334837_011866 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from Stordalen Mire, Sweden - 714 S3 30-34 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3821 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Norrbotten County, Stordalen Mire | |||||||
| Coordinates | Lat. (o) | 68.3531 | Long. (o) | 19.0476 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F045016 | Metagenome | 153 | N |
| F045053 | Metagenome / Metatranscriptome | 153 | N |
| F052500 | Metagenome | 142 | N |
| F091215 | Metagenome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334837_011866_1291_1983 | F091215 | GAG | MRRTVEETIRFYREDGAYVLVHEGTLDGGSNLHYIVGLVERKMRLKLKSLGYFGHGTHRQERFRSGQPIDEHAFARRTRQLLRLPLSALAACLMAKGVLGPKPGEPAFGNLNERTRAASLKEWAISYYEASEITCPESLNVLESNRLFRWRRIPFECLRHNLQGSYEIPVKVECYRQLLAKGHPLPPLICRCRGWELFEGYHRLRAHEMVESETIPCVIIGSGREGLGLC |
| Ga0334837_011866_1967_2428 | F045053 | N/A | MTTVASYSIPGFGEVNVVQQNDAGNRFWDLFAASGEWLNEGHPFRYKPRRVQVEAFLAQRLKEALVRMKKECKRFRITQEDLDELIHEAAQAGNARLSQASDEKQQERLITTAEEQAARVNNGGRASQLVYLLEAYGEAGAVRALRERYETNG |
| Ga0334837_011866_2627_3025 | F052500 | N/A | MTTQAQRHMASEIASEISKLQGIKSAVVDDDNGYGSFNVFIELRNRLEGHYASRRIEFEISLHGLMARITRIIERHGARLEWHEPPRRQYSRQGHGKKLFEGYSTDSYKISVHISQPEAEVQRQQETQLAFG |
| Ga0334837_011866_3093_3560 | F045016 | GGA | MTPAIAQPPVVTGTSLINAACRKYHEAVEKFKRVEAEWQTLPTQEAVTLILEIQGILRETRQLLDQGTAQMPDMNSPEWEEAIGKNTRDQIAECQQKAYDLGNRVDDVLAGSDHLIQTCLAHQEAYERHQTAKALSLVVAGTILTIGVALYFLLR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |