Scaffold Ga0334980

Basic Information
Taxon OID	3300033816 Open in IMG/M
Scaffold ID	Ga0334980_0000902 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033816 Open in IMG/M

Scaffold ID

Ga0334980_0000902 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13720
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (18.75%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13720

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (18.75%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F017989	Metagenome	237	Y
F021128	Metagenome	220	N
F023326	Metagenome	210	Y
F025268	Metagenome / Metatranscriptome	202	N
F027487	Metagenome / Metatranscriptome	194	N
F058252	Metagenome	135	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0000902_2473_2850	F021128	GGA	MKLKNKNLAPVGGWYWKYEIKRDNLTFPAIVYGSTWSGLMQNIQKDYRSNGVELPANIEQMVEDQICQRQPSDRCWYSDGLGDTIAQAIHTVAAVTDRVLGTKLEHKARGCSSCNRRRNALNSLS
Ga0334980_0000902_583_2436	F023326	N/A	MSRVFSSSKGIRRYGMQFSENMDDLGIELYCYAISRGQYGRTYCVRHNINLSDFKLLSPHEHFLNAVKLQWPTEVSIVNRGYTNTQLLRTLEELCNNTDICLAGAASMGKSFPVGLWIYLDWCAAPHCTSSWVATTTLGASEDRIWGIISKLYKCARVQIGKLIDYRHMIVWGGASNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRVRLALDELPEMELGAITARTNLAANNDKTFIGIGNPSAGDNPHTRWAMPKGCSNFDSVSPDMDKWETGTGVCLFYNGMRSPNFAAPANEPSPFPFLMDREKQQEMLKLCYGDENAIDYVRNAIGWWPKSGFAQTILTADLIRNADTNEEPLWDSEGFTKVAGFDTAFTVGGDRCVLTIAKLGYVRGTRNRVMWLEDQKIIQLSANAAAEFEIQLATEVVGFCRTAGVQPSKFGMDVSGDGGRVGQAIIREWLRFDAGGAAIALISSMGKPTDRIAAEVDKRPCKDVYDRLVSEYYYSLYHAFKSRVIFGVDPASDLARELCLRRYTIKSKKIAIETKDELKGRTGYSPDLSDSLVYALEMARRNGLVFIGNDKPVPTNRFWARDEKPVESFSDDDAYSSDDNGDW
Ga0334980_0000902_64_291	F058252	N/A	MTTSNTFESRIICEGVEVTNTPEKILFRQKFNQCWVKKKDIRLHETLGYLDGEKVVRIVVPEEVANTLELAGILD
Ga0334980_0000902_7202_8611	F025268	N/A	MSDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQSWPLNHTTEQKAFRFGRGFHDPCTPFRAITDTYCETDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGSGHKWMGITTEDGTYCGLVDDQAWFVPEHTINNEAGYDLCAIRVKLAPADLNKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINAARFNADTAFNASLPAFNEADPATWARLVRVPRYVKTVLENGCAYVPNKAYRNADFGISVAMVNKAMCKWTMPSSTGYGQAQQMTQNYAGDWEWKNPDWECNRWRKSGFYQAQFRMAAQIKDPTIMHTFLHRMPKSKNLYGSCCPVQSYVVPENNQDCYSCAGVGDIVVPS
Ga0334980_0000902_9336_9599	F027487	N/A	MACFTSLPYRDKTYPFLQTIFAATELTPISFGCYDASSDASKLYQFYLGFATIGGLTPVSENCFVQKTEDQQYFLTNEALSAAINPA
Ga0334980_0000902_9622_9888	F017989	N/A	MALTQPCFTDLTPDFQNYKLYEQLKQVAGFDIPQYDEIDITYYGATNNIATVQYLNGGNVVATLTLVYATQPPTVNDTNLVNITIAYP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334980_0000902

Overview

Ecosystem & Geography

Associated Families

Sequences