NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0364928_0053387

Scaffold Ga0364928_0053387


Overview

Basic Information
Taxon OID3300033813 Open in IMG/M
Scaffold IDGa0364928_0053387 Open in IMG/M
Source Dataset NameSediment microbial communities from East River floodplain, Colorado, United States - 30_j17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)892
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016892Metagenome / Metatranscriptome244Y
F075145Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0364928_0053387_13_120F075145N/AVAIWLATLFFTAMLFVPLLREALRRVTELPSGGPF
Ga0364928_0053387_507_713F016892GGAMQWLSSRSVATVWLLAALSLVGWLIVNLDVAGWIILVVTVGLMAFELTRKRDGQGARRKARVPDEPTG

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