NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0364926_009845

Scaffold Ga0364926_009845


Overview

Basic Information
Taxon OID3300033812 Open in IMG/M
Scaffold IDGa0364926_009845 Open in IMG/M
Source Dataset NameSediment microbial communities from East River floodplain, Colorado, United States - 65_j17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1585
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004499Metagenome / Metatranscriptome435Y
F075478Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0364926_009845_379_753F004499GGAGGMMNTNKTVATGAAVGLLLIAAVTWAAGDEQTITGVISKVSPTTRIATVTPASGPPIFVQFAFNAGGPCNTCLGSGRSGPTFAETVTEGSTWTLTYTTSLPAGAAAWFPGGTVNTVYRAVEVKAK
Ga0364926_009845_3_299F075478N/AVKPPQYSVTVKVVQKNAGTPVEDAQVRLGIYFACSDQTGLAKVAIPQGTYGLDVLKTGYEADSRVLDVNGDVTVEVEVAVIPPENPDAHWLFDPTKRL

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