NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314868_012111

Scaffold Ga0314868_012111


Overview

Basic Information
Taxon OID3300033758 Open in IMG/M
Scaffold IDGa0314868_012111 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SR_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)869
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter → Conexibacter sp. S30A1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.5438Long. (o)-74.6258Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016802Metagenome / Metatranscriptome244Y
F064235Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0314868_012111_247_456F064235GAGMARRSIVQLRLELAESPAPAAALWELVGEQQRQAAMSMLTALIAQTLAPEAAGDERVPVRGAGTVGRDD
Ga0314868_012111_449_667F016802GGAMTEGRVGGDCLQLVTVCLSDDRAGELCDEHGRPIAPAPEVLTHLRPSEARTLAFCLLELAELADRRSTEDGR

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