NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0371489_0040288

Scaffold Ga0371489_0040288


Overview

Basic Information
Taxon OID3300033755 Open in IMG/M
Scaffold IDGa0371489_0040288 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB26FY SIP fraction
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3276
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: McLean, Ithaca, New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003703Metagenome / Metatranscriptome473Y
F056445Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0371489_0040288_298_567F003703GAGMNWKKHQTLTLTILLVALARIVLESAFGEAPSSVYAFLQIGVRVLIVMAAWAFLKTCWELGTVHYKKLCTFVGALRRFCRDYWSKTAAV
Ga0371489_0040288_796_1176F056445AGGAGLGTTAATQEVAPDRRESESRRASEAKPTREHPAPGGQHEEQPAVRRGLKRRRVPKEDGSAGTVRYFLTKTTSNGAPELDEEMPDEHQALIAALKQDRSFVSVTEWRAKVDIKKGAPVIEKDPVVRE
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