NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334844_035874

Scaffold Ga0334844_035874


Overview

Basic Information
Taxon OID3300033743 Open in IMG/M
Scaffold IDGa0334844_035874 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 714 E1 5-9
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)964
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3533Long. (o)19.0467Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025952Metagenome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0334844_035874_20_283F025952N/AMLFVELGSPVGELALAVFVSVPEAGAVTVTVTLLTWPLAKVPKLQLTTPLLLAPPPLALTKLTPKGSVSVTTTLLALDGPKFVTDIV
Ga0334844_035874_647_964F025952N/ALLLARTEAEPVLPIATSATGVTVVMTGGVTLFVLFGSTVGELTLAMLVSEPEAGAVTVTVRLLTWPLAKVPNVQLTTPLLLAPPPLALTNVTPSGNVSVTVTLLAL

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