NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314858_015758

Scaffold Ga0314858_015758


Overview

Basic Information
Taxon OID3300033742 Open in IMG/M
Scaffold IDGa0314858_015758 Open in IMG/M
Source Dataset NameSea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawater
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1601
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.2943Long. (o)-156.7153Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003051Metagenome / Metatranscriptome510Y
F004856Metagenome / Metatranscriptome421Y
F010532Metagenome302N
F020816Metagenome / Metatranscriptome222N

Sequences

Protein IDFamilyRBSSequence
Ga0314858_015758_1090_1260F020816GGAGGMKVYEITVSTTVQIDSLDDYAESKEHAIDIMWDRWGVYKDTLEITKVKTWEEDDEH
Ga0314858_015758_1260_1529F004856AGGAGGMMSDWLEGTKPKIIEARYSAYLSWDLEELGIDWDEVEDWDLSRADLEITFKDGTKKTYENWQDLDIDYKHNFEEVLILDEDWNQVEGLN
Ga0314858_015758_2_235F003051GAGGMKTKILKSKVTIDMSVSEYDDLFKYINKLDSMLNTLHETNDLWLSDVSNLSSLKWELTQLLDAEWNPDIYRYVKRGSK
Ga0314858_015758_703_942F010532AGGAGGMMSKTLYKRLEDICAREYVVNKLSANKFRTFVDYLYDDIKMWDKPMSVSEVDIIHRIEEHMSYMVSSFLNRAYEGTNVS
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