NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314858_003064

Scaffold Ga0314858_003064


Overview

Basic Information
Taxon OID3300033742 Open in IMG/M
Scaffold IDGa0314858_003064 Open in IMG/M
Source Dataset NameSea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawater
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2793
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.2943Long. (o)-156.7153Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002593Metagenome / Metatranscriptome545Y
F087763Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0314858_003064_1810_2250F002593N/AMEIVNMSKLIYSRNGSATTESIRNAPPMLKAIWNQAHGFGANIVRVRANLDRFGNDTGKTFNSYHHEKVSVYKQKDEVHENNALYFARKIPLTKANKGMQILEVASSLDVQDTLDTIDDIQYYAETSFLGRLYNRIVYGTPMSIAS
Ga0314858_003064_2403_2792F087763GGAGMAQMRVKDQDLIVEQVVEKIEANELDKFKAREDVIGIQSVIDTRIDMIQQLYYTFKQYEKNIKDDIKELVELVNDFQEVNNLKESEHYNVTKGFRLMKTSHYGSPEVPEYEINWKMPIPQKRELSTKLRL
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