NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314858_001418

Scaffold Ga0314858_001418


Overview

Basic Information
Taxon OID3300033742 Open in IMG/M
Scaffold IDGa0314858_001418 Open in IMG/M
Source Dataset NameSea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawater
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3545
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.2943Long. (o)-156.7153Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010277Metagenome306Y
F019561Metagenome229Y
F031295Metagenome183N

Sequences

Protein IDFamilyRBSSequence
Ga0314858_001418_1236_1670F019561GGAGMTDKFTKPILRDLRISLEDILRSESKSDKIPFELTLGNCSFEEEKATFKLVVTFKGNSLQDIEKKKEKEDLEYYAKYFDLDLNRKHSRYTLIGYKVKSRKLPWIVSDNQKKGEYIISDDQAKKLFGKLDVETFLDGQRKAQANG
Ga0314858_001418_2035_2385F031295AGGMVRSEEKLYGVISALTDEYNNYDKLGKRLRKPQFLDLVNDLEIVDEELHDLKTPPITDGIQIDNKVCMFYVITELNDILTEKDDQQKMIMLTEFYNSLVFNLGVNALNNHNNDWEK
Ga0314858_001418_2379_2573F010277AGGAGGMSNALKDKLLEVEMFVGDKLADYTNEQVIEKVRREFGLQMYVNHAEELLYEFQQDINFERSQSW
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