NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316617_100175602

Scaffold Ga0316617_100175602


Overview

Basic Information
Taxon OID3300033557 Open in IMG/M
Scaffold IDGa0316617_100175602 Open in IMG/M
Source Dataset NameWetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1667
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)41.3776Long. (o)-82.5117Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005293Metagenome / Metatranscriptome405Y
F029411Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0316617_1001756022F029411N/AMNVDFNTIDPQNELSDLYTPDYREQSINEDAYLDQSYEDRFELPCMADYQ
Ga0316617_1001756023F005293AGGAMTSDYVPFVPTRDDLIGFISDTYKEINGFRPRPNWSELTYNQLDQWGQRLSAEVTAYRNQEVIRNRIARGLRRAQQRAWVEKKRGYFTPPTFTLGNIVNF

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