NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316617_100095211

Scaffold Ga0316617_100095211


Overview

Basic Information
Taxon OID3300033557 Open in IMG/M
Scaffold IDGa0316617_100095211 Open in IMG/M
Source Dataset NameWetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2076
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)41.3776Long. (o)-82.5117Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018836Metagenome / Metatranscriptome233Y
F027508Metagenome / Metatranscriptome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0316617_1000952114F018836N/AMSSSVPAGQTDTDDWFDLDKYRQAAGVAYEFSKKKMETSGEQERETLGKGAEEQRTSARQGQEFKQADEARDYGQSQRAYRY
Ga0316617_1000952116F027508N/AMALPEGNALTDTKTDTATNFDIANFEKLLERLEASKGRQQRQKSVEGRRDIFSQGLASMMSNF
Ga0316617_1000952117F027508N/AMALPEGNALTDTGTDTATNFDIANFEKLLERLEASKGRQQRQKSVEGRRDIFAQGLAGMMSNF
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