NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316630_10328639

Scaffold Ga0316630_10328639


Overview

Basic Information
Taxon OID3300033487 Open in IMG/M
Scaffold IDGa0316630_10328639 Open in IMG/M
Source Dataset NameWetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1191
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)41.3776Long. (o)-82.5117Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029799Metagenome187Y
F041846Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0316630_103286391F041846N/ALLLVLLAGMLWRGRVRHCWAFAAYVVAVLLGNTLVSLWPGRFFNPPFWMVKQGVYDALKVAIALELAWRSFRAFPGAQRTAQRVLLALLALSTLSLVWVSSPSSFETLWEWQPPVATAALWLLTATALMVVWYQVPVNGWQRAIMLGLAPYLLVFVSLLGLLERRGWAAVGELFATAETLAYLALVAFWSWAAWRRDPAPAASAGSRA
Ga0316630_103286392F029799GGAGVTLELVLSSVGCVLLCYTLGRYNRALTLQRWQFVLNAPERQAIESLRQRMAVDSALARQALEAAGRARETSRPPDALTVLRVALSVLEEAGADRLTRLRAMGVYSRMVRAISPLPPPSPAPFRGTELRAAASAAGVVHRLLVGTQERFRLWLLVLGLGVRIVLRGGRRSVDAVGREPLRPRHWEAFARG
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