NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316605_10037012

Scaffold Ga0316605_10037012


Overview

Basic Information
Taxon OID3300033408 Open in IMG/M
Scaffold IDGa0316605_10037012 Open in IMG/M
Source Dataset NameWetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3326
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Soil Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)41.3777Long. (o)-82.5117Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029799Metagenome187Y
F041846Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0316605_100370122F029799GAGGMLELVLSTLGGGLLCYGLGRYNRTLTLQRWRFVLNAPERQAIDSLRQRMQLDSALARQAFETADRAREADRHPDALTVLRVALSILEDAGADRLTRLRAMGVYSRMVQAIKPLPSPSAKPFRTTELRASATAAGFAHRLLVGAEERFRLWLLFLGLGVRIVLRGGRRSAAAAARVPGRARPWEAFADGMDDFDALDSSHLTAFEALVASLSAVDRGDRLRIWEQIAGDLR
Ga0316605_100370123F041846AGAAGMTNLEALVAHATKLALLALLAGIVWRGRARLCWSFALYVVAMLLGNSLATLWPSRFLNPSFWVLKQGVYDVLKMGIALELAWRALSAFPGAARTARRVILALLSASTLALALLAHPSSYMNLWDWQPRVTTAALWLLTGTALLVVWYQLPVHEWQRAIMLGLAPYLVVFVALLGLLHRWGWTSREPIAVAAQATFLCLAVFWTWAAWRGPATPGPVVAGTRGA
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