NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326727_10001168

Scaffold Ga0326727_10001168


Overview

Basic Information
Taxon OID3300033405 Open in IMG/M
Scaffold IDGa0326727_10001168 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)100655
Total Scaffold Genes91 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (68.13%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000737Metagenome / Metatranscriptome914Y
F002860Metagenome / Metatranscriptome525Y
F005085Metagenome / Metatranscriptome412Y
F009018Metagenome / Metatranscriptome324Y
F047259Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0326727_1000116833F000737N/AMPTPTQKGQRGSRVKLGGSILVLIVLENGRQIRGGMNQLSVNGGLGSFEDPLDEGIRVTVLFHLGCTSVRCRAQMMFPMWATKGCLQPFRFLDLPADTSASLSRELDALVQAGASEEEEESE
Ga0326727_1000116844F002860GGAGMPTSNDSKPGQNSAQAAEQVASAHKILKELQQKVGNHPELGEAITKLEMALNTLAVKTGGLL
Ga0326727_1000116849F047259GAGMKCTAAPFFGSDIGDGLRKVPAVAAKILSVVLALAIRLVLGFRQYDGTVLARSLAVTLSIFDANLNEVRVVGYRVAFGDSEAAISSFHLDAVVGDAQTDGEAKSL
Ga0326727_100011685F005085GGAGGMEKQFESPQADHVSREELTSVMTALEPDQLISAKEHHHCPRRRLTRIEMLVFWALRIYLVFMVGVVIYQIWTSVR
Ga0326727_1000116851F009018GGAGGMTIHIRKFIATGLAIASFALATSAAMAQSYTGNWQVTVTQSQRSNGTYCVALTDNGSYGWPHSGEASLIPNNSQYPGYFTGIDGLMTVTFTYPSGEGDCCDFFVLTARASNGRIGKGAFNYLGLTDNGFVAFGKKDGC
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