| Basic Information | |
|---|---|
| Taxon OID | 3300033405 Open in IMG/M |
| Scaffold ID | Ga0326727_10000173 Open in IMG/M |
| Source Dataset Name | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 276945 |
| Total Scaffold Genes | 261 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 163 (62.45%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: New York | |||||||
| Coordinates | Lat. (o) | 42.5488 | Long. (o) | -76.2662 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000482 | Metagenome / Metatranscriptome | 1089 | Y |
| F001412 | Metagenome / Metatranscriptome | 701 | Y |
| F002165 | Metagenome / Metatranscriptome | 588 | Y |
| F005675 | Metagenome / Metatranscriptome | 393 | Y |
| F022600 | Metagenome | 213 | Y |
| F022705 | Metagenome / Metatranscriptome | 213 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0326727_10000173144 | F005675 | AGGAG | MWIHGNNQCSHWNWVAIFSYTASLAVSVAIWRGVFLAVEHLVK |
| Ga0326727_10000173168 | F022705 | N/A | MELFLNLCWLSLLLPAWLLWRRRHGSGKAVTSTGKRAPLVFLCALGCALILLFPVISATDDLHAMRPEMEESERGFRHAGHCACNLHAPVHSALADLPSSAALTTTLEQIGTILPFLPQTAGVFSALAPAGRAPPIGPLAVSTVPAASL |
| Ga0326727_10000173172 | F002165 | AGG | MNESTVGKTVEKMAEKTGSQVEETIAQHELDLGRLKDALALLGVNACSWCKKFLRRSDPGALFDAGELVCYGCISGWWAHRCTELSSKDREILEGKLVYWLRGSHHAELFKDPAKLPESSLQELNLVATCLECRGTGSSLGEERCRYCAGRGTVWVIVSRNRE |
| Ga0326727_10000173218 | F000482 | AGAAG | MQFSRIHLAMAVGSAGLLVAVFLGYLYWMSNQGPVLARSEERDPLTHLPVSITMNPFRDRTIERIANQFISEMRDGNCRQLLAEWEKDYRKKRADFVCESETQHPLISWNLVEWEDAPPLVILHYKGQRYTSPTQTATYKELFSVTEEKKDSGWMVTKYDSFY |
| Ga0326727_10000173222 | F001412 | GGA | MKLNQVAKTVVLGLGVLLASSAFASNKGALHVREPLEFNGQHLSPGEYQLNWDGTGANVEVSFMQGKREVAKATAKVVELDRASSDDSVIVDHTTGKATISQVRFGGKKYALVIGPTEKAEMNGSSTK |
| Ga0326727_10000173228 | F022600 | N/A | MAAYAAVTLLRPGTMLDALWVLNKAGHAQLASLGKGVGLGFAALSASLCAAAVGWFRRRYWGWVPGTTIIAINATGDFINGVRGEWLKGAIGVAIAGLLLFYMTRSGVRNFFRHG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |