NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326727_10000031

Scaffold Ga0326727_10000031


Overview

Basic Information
Taxon OID3300033405 Open in IMG/M
Scaffold IDGa0326727_10000031 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)578686
Total Scaffold Genes487 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)366 (75.15%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Associated Families10

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000157Metagenome / Metatranscriptome1872Y
F000372Metagenome / Metatranscriptome1220Y
F000419Metagenome / Metatranscriptome1160Y
F000525Metagenome / Metatranscriptome1049Y
F000633Metagenome / Metatranscriptome971Y
F000985Metagenome / Metatranscriptome813Y
F012097Metagenome / Metatranscriptome283Y
F039859Metagenome / Metatranscriptome163Y
F063426Metagenome / Metatranscriptome129Y
F065989Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0326727_10000031116F063426AGTAGGMPQEISVSYHAIKSKVYRLIDALVAGEKSEAEIQESIRRWWSLIHPADRPVAQKYLLTVLGRSVSALDAIGDGLTSSSGCAPSRGQFPSERIKVEEPLANQNQFTSPV
Ga0326727_10000031159F000419N/AMMAINFVRTRKESDDSISFQPVERLKVYLFGVTVLFASFGMGETVYRLLFSEFDGATDRIPVEVLFGIVFAWFATKFVGGVYRNRKERKARLDFIWARNHQIRGALEGITPLAHPLKNQQSIRVIREEVDKIEWALKEILPG
Ga0326727_10000031172F000157AGGAGVAANELSSILSRVVEIKADYDTRLLAQQLGTNYRSLMYWLRGERQLPAELLPRMCLLLKNYEALDFLESQAGRVAFKLPEPDITLERELVAVSHLIREVGEALESVAETLADGVVEESELRTTIPKLEAVIQECASLKYLLEDLSKKRKKKTKNHL
Ga0326727_10000031181F039859GGAGGMPSARVSALTREDITAAAKRLQGSRPAKWTAIIEGRELPARPLVLEAAGVPPNDPTNSHQAVAILKDFGFDVRYRGKNVSDARAEVEPDAIEALIRSLRGRYQGSPSLVKDREREHRVEKDRPTR
Ga0326727_10000031291F065989N/AMKVLLLHPDDSAEVGPWAGTQWDLAIDLGWSGTHAYSQQAERLGCRIVSIYGLMDHAQHRRRMRDLLAVGLDQLVDSESVDWWDAFSVFPYQELEQLMLLSCLAEQIPDQAEVFASRPHFTLAALSRLLQRKMENREIRILSLEYKSPIGQRSRRYLKAALALHPSQLAEIALDKWDADYRLRRHFTRQPGASSNPAILLPSAYVNVSLAQVAYARMLPHRRFLMIVTRRSGRLRQLPPNVEVRSLASYAPRLLPSTDTEQARLLALWQGVKNKLFENDPVLRHARDLHVFDGFAKFLKTGLRVRDAWRQVFAGEPIAAVLSADEHNPYTRLPIWLARSRKLRTVFCDHGALNMSFGIRRPISDAYLTKGPMARDYCVEWCGVSAGKIVVGSPPEAHSASPSTPVQRDWIVFYSEAYELFSGRTQTFYAELLPELCQLARRVGRKVVIKLHPFESRRTRAAILDRVLSAEERSLVEVREGPMTPDLFARAWCSLTVESSVAVESTLNRVPCFLCSWFDASWYDYGKQYARFSASYPLDSPRRIREIPQLLEHFHITDETRQGLQTPISPENLESVLSGM
Ga0326727_10000031316F000525N/AMSRKRATIASRLETLWCVVLLSLCLACSPRDFLTRRLAADLISDSDTFKTPQLFWLRTGIVSNKDFTSPESLVLQRRGWIIGTEQKCPSGVDPPPCWDVLLTPIGVETVRPLILGALPANGPAIQVARRELVGISGISKAGKFADVEFTWRWIAINQVGAALYDTGVRYRSTVAFRGYDDGWRIVEQTMPSNQTLDESLRNAQPTAP
Ga0326727_10000031389F000633GAGGLRFEVNGQMFFVNFVPEEGRWYCFAPTATGVQRIPVSMDASPFEAFTVAMDEQAKEVVN
Ga0326727_10000031412F012097AGGCGGVNTLLGLLDEIPSPAEQPRATPIRDRSTRHSASPTALLHTEQIHALVHQLFFQQESKPVRHVGFVAIEACSETATLCLQVAKALAEEDRYDIGLFDAHPDSLPLQTKLQIPSPIGAELTWPIAPRLWLVPRQSWLPQGSAQRITEQNLSRLREIMTEFDFSILSCAPASWLTACIGQTCDGLVLVLTANKTRRLVAAQIKDHLTKARVPLLGTVLADRRFPVPQGLYRSL
Ga0326727_10000031416F000372AGGAGVTDSALQSRVARRWTVIASGLLLLALGLVVIYTGPNAFYSPVALVVVSAIGLAALLLQVRFRRDLPIYSPLWLNVLGIVCATVSLFADLLRMPSRLLDLVAFVAVVCFGISGLLILHALRRRVQVPQSTETQ
Ga0326727_10000031427F000985AGGMKNVYEVLRQKELELTRLEKEVEALRVAAPLLSEEKESMAEAPKPSLAASAPPQPVRIPPVVAAQAAPAPARVAGWEDAAKRWP
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